| analysis_type() const | DICe::Schema | inline |
| analysis_type_ | DICe::Schema | private |
| check_for_blocking_subsets(const int_t subset_global_id) | DICe::Schema | |
| comm_ | DICe::Schema | private |
| comm_rcp typedef | DICe::Schema | |
| compute_def_gradients_ | DICe::Schema | private |
| compute_laplacian_image_ | DICe::Schema | private |
| compute_ref_gradients_ | DICe::Schema | private |
| conformal_subset_defs() | DICe::Schema | inline |
| conformal_subset_defs_ | DICe::Schema | private |
| correlation_routine() const | DICe::Schema | inline |
| correlation_routine_ | DICe::Schema | private |
| create_mesh(Teuchos::RCP< Decomp > decomp) | DICe::Schema | private |
| create_mesh_fields() | DICe::Schema | private |
| def_extents() const | DICe::Schema | inline |
| def_extents_ | DICe::Schema | private |
| def_image_rotation_ | DICe::Schema | private |
| def_img(const int_t index=0) const | DICe::Schema | inline |
| def_imgs() const | DICe::Schema | inline |
| def_imgs_ | DICe::Schema | private |
| default_constructor_tasks(const Teuchos::RCP< Teuchos::ParameterList > ¶ms) | DICe::Schema | private |
| disp_jump_tol() const | DICe::Schema | inline |
| disp_jump_tol_ | DICe::Schema | private |
| enable_normal_strain(const bool flag) | DICe::Schema | inline |
| enable_normal_strain_ | DICe::Schema | private |
| enable_rotation(const bool flag) | DICe::Schema | inline |
| enable_rotation_ | DICe::Schema | private |
| enable_shear_strain(const bool flag) | DICe::Schema | inline |
| enable_shear_strain_ | DICe::Schema | private |
| enable_translation(const bool flag) | DICe::Schema | inline |
| enable_translation_ | DICe::Schema | private |
| estimate_resolution_error(const Teuchos::RCP< Teuchos::ParameterList > &correlation_params, std::string &output_folder, std::string &resolution_output_folder, std::string &prefix, Teuchos::RCP< std::ostream > &outStream) | DICe::Schema | |
| execute_correlation() | DICe::Schema | |
| execute_cross_correlation() | DICe::Schema | |
| execute_post_processors() | DICe::Schema | |
| execute_triangulation(Teuchos::RCP< Triangulation > tri, Teuchos::RCP< Schema > right_schema) | DICe::Schema | |
| execute_triangulation(Teuchos::RCP< Triangulation > tri) (defined in DICe::Schema) | DICe::Schema | |
| exp_rcp typedef | DICe::Schema | |
| fast_solver_tolerance() const | DICe::Schema | inline |
| fast_solver_tolerance_ | DICe::Schema | private |
| filter_failed_cine_pixels_ | DICe::Schema | private |
| final_gamma_threshold_ | DICe::Schema | private |
| first_frame_id() const | DICe::Schema | inline |
| first_frame_id_ | DICe::Schema | private |
| force_simplex_ | DICe::Schema | private |
| frame_id() const | DICe::Schema | inline |
| frame_id_ | DICe::Schema | private |
| frame_skip_ | DICe::Schema | private |
| full_ref_img_height_ | DICe::Schema | private |
| full_ref_img_width_ | DICe::Schema | private |
| gauss_filter_images_ | DICe::Schema | private |
| gauss_filter_mask_size_ | DICe::Schema | private |
| generic_correlation_routine(Teuchos::RCP< Objective > obj) | DICe::Schema | |
| get_params() | DICe::Schema | inline |
| global_field_value(const int_t global_id, const DICe::field_enums::Field_Spec spec) | DICe::Schema | inline |
| global_num_subsets() const | DICe::Schema | inline |
| global_num_subsets_ | DICe::Schema | private |
| gradient_method() const | DICe::Schema | inline |
| gradient_method_ | DICe::Schema | private |
| has_extents() const | DICe::Schema | inline |
| has_extents_ | DICe::Schema | private |
| has_initial_condition_file() const | DICe::Schema | inline |
| has_output_spec() const | DICe::Schema | inline |
| has_output_spec_ | DICe::Schema | private |
| has_post_processor_ | DICe::Schema | private |
| image_deformer() const | DICe::Schema | inline |
| image_deformer_ | DICe::Schema | private |
| img_height() const | DICe::Schema | inline |
| img_width() const | DICe::Schema | inline |
| imp_rcp typedef | DICe::Schema | |
| init_params_ | DICe::Schema | private |
| initial_condition_file() const | DICe::Schema | inline |
| initial_condition_file_ | DICe::Schema | private |
| initial_gamma_threshold_ | DICe::Schema | private |
| initial_guess(const int_t subset_gid, Teuchos::RCP< Local_Shape_Function > shape_function) | DICe::Schema | |
| initialization_method() const | DICe::Schema | inline |
| initialization_method_ | DICe::Schema | private |
| initialize(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params) | DICe::Schema | private |
| initialize(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Schema > schema) | DICe::Schema | private |
| initialize(Teuchos::RCP< Decomp > decomp, const int_t subset_size, Teuchos::RCP< std::map< int_t, Conformal_Area_Def > > conformal_subset_defs=Teuchos::null) | DICe::Schema | private |
| initialize_cross_correlation(Teuchos::RCP< Triangulation > tri, const Teuchos::RCP< Teuchos::ParameterList > &input_params) | DICe::Schema | |
| interpolation_method() const | DICe::Schema | inline |
| interpolation_method_ | DICe::Schema | private |
| is_initialized() const | DICe::Schema | inline |
| is_initialized_ | DICe::Schema | private |
| levenberg_marquardt_regularization_factor() const | DICe::Schema | inline |
| levenberg_marquardt_regularization_factor_ | DICe::Schema | private |
| local_field_value(const int_t local_id, const DICe::field_enums::Field_Spec spec) | DICe::Schema | inline |
| local_num_subsets() const | DICe::Schema | inline |
| local_num_subsets_ | DICe::Schema | private |
| map_rcp typedef | DICe::Schema | |
| max_evolution_iterations_ | DICe::Schema | private |
| max_solver_iterations_fast() const | DICe::Schema | inline |
| max_solver_iterations_fast_ | DICe::Schema | private |
| max_solver_iterations_robust() const | DICe::Schema | inline |
| max_solver_iterations_robust_ | DICe::Schema | private |
| mesh() | DICe::Schema | inline |
| mesh_ | DICe::Schema | private |
| mf_rcp typedef | DICe::Schema | |
| motion_detected(const int_t subset_gid) | DICe::Schema | |
| motion_detectors_ | DICe::Schema | private |
| motion_window_params() | DICe::Schema | inline |
| motion_window_params_ | DICe::Schema | private |
| normal_strain_enabled() const | DICe::Schema | inline |
| normalize_gamma_with_active_pixels() const | DICe::Schema | inline |
| normalize_gamma_with_active_pixels_ | DICe::Schema | private |
| num_frames() const | DICe::Schema | inline |
| num_frames_ | DICe::Schema | private |
| obj_vec() | DICe::Schema | inline |
| obj_vec_ | DICe::Schema | private |
| obstructing_subset_ids_ | DICe::Schema | private |
| obstruction_skin_factor() const | DICe::Schema | inline |
| obstruction_skin_factor_ | DICe::Schema | private |
| opt_initializers_ | DICe::Schema | private |
| optical_flow_flags_ | DICe::Schema | private |
| optimization_method() const | DICe::Schema | inline |
| optimization_method_ | DICe::Schema | private |
| output_beta() const | DICe::Schema | inline |
| output_beta_ | DICe::Schema | private |
| output_deformed_subset_images() const | DICe::Schema | inline |
| output_deformed_subset_images_ | DICe::Schema | private |
| output_deformed_subset_intensity_images_ | DICe::Schema | private |
| output_evolved_subset_images() const | DICe::Schema | inline |
| output_evolved_subset_images_ | DICe::Schema | private |
| output_spec_ | DICe::Schema | private |
| override_force_simplex_ | DICe::Schema | private |
| path_distance_threshold_ | DICe::Schema | private |
| path_file_names_ | DICe::Schema | private |
| pixel_integration_order() const | DICe::Schema | inline |
| pixel_integration_order_ | DICe::Schema | private |
| pixels_owning_element_global_id() | DICe::Schema | inline |
| pixels_owning_element_global_id_ | DICe::Schema | private |
| post_execution_tasks() | DICe::Schema | |
| post_processors() | DICe::Schema | inline |
| post_processors_ | DICe::Schema | private |
| prepare_optimization_initializers() | DICe::Schema | |
| prev_img(const int_t index=0) const | DICe::Schema | inline |
| prev_imgs() const | DICe::Schema | inline |
| prev_imgs_ | DICe::Schema | private |
| print_fields(const std::string &fileName="") | DICe::Schema | |
| project_right_image_into_left_frame(Teuchos::RCP< Triangulation > tri, const bool reference) | DICe::Schema | |
| projection_method() const | DICe::Schema | inline |
| projection_method_ | DICe::Schema | private |
| record_failed_step(const int_t subset_gid, const int_t status, const int_t num_iterations) | DICe::Schema | |
| record_step(Teuchos::RCP< Objective > obj, Teuchos::RCP< Local_Shape_Function > shape_function, const scalar_t &sigma, const scalar_t &match, const scalar_t &gamma, const scalar_t &beta, const scalar_t &noise, const scalar_t &contrast, const int_t active_pixels, const int_t status, const int_t num_iterations) | DICe::Schema | |
| ref_extents() const | DICe::Schema | inline |
| ref_extents_ | DICe::Schema | private |
| ref_image_rotation_ | DICe::Schema | private |
| ref_img() const | DICe::Schema | inline |
| ref_img_ | DICe::Schema | private |
| robust_delta_disp() const | DICe::Schema | inline |
| robust_delta_disp_ | DICe::Schema | private |
| robust_delta_theta() const | DICe::Schema | inline |
| robust_delta_theta_ | DICe::Schema | private |
| robust_solver_tolerance() const | DICe::Schema | inline |
| robust_solver_tolerance_ | DICe::Schema | private |
| rotate_def_image() | DICe::Schema | |
| rotation_enabled() const | DICe::Schema | inline |
| save_cross_correlation_fields() | DICe::Schema | |
| save_off_fields(const int_t global_id) | DICe::Schema | inline |
| Schema(const Teuchos::RCP< Teuchos::ParameterList > &correlation_params=Teuchos::null) | DICe::Schema | inline |
| Schema(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params) | DICe::Schema | |
| Schema(const std::string &input_file_name, const std::string ¶ms_file_name) | DICe::Schema | |
| Schema(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params, const Teuchos::RCP< Schema > &schema) | DICe::Schema | |
| Schema(const int_t roi_width, const int_t roi_height, const int_t step_size_x, const int_t step_size_y, const int_t subset_size, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) | DICe::Schema | |
| Schema(Teuchos::ArrayRCP< scalar_t > coords_x, Teuchos::ArrayRCP< scalar_t > coords_y, const int_t subset_size, Teuchos::RCP< std::map< int_t, Conformal_Area_Def > > conformal_subset_defs=Teuchos::null, Teuchos::RCP< std::vector< int_t > > neighbor_ids=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) | DICe::Schema | |
| set_def_image(const std::string &defName) | DICe::Schema | |
| set_def_image(const int_t img_width, const int_t img_height, const Teuchos::ArrayRCP< intensity_t > defRCP, const int_t id=0) | DICe::Schema | |
| set_def_image(Teuchos::RCP< Image > img, const int_t id=0) | DICe::Schema | |
| set_force_simplex(Teuchos::RCP< std::set< int_t > > ids) | DICe::Schema | inline |
| set_frame_range(const int_t start_id, const int_t num_frames, const int_t frame_skip) | DICe::Schema | inline |
| set_motion_window_params(Teuchos::RCP< std::map< int_t, Motion_Window_Params > > motion_window_params) | DICe::Schema | inline |
| set_normalize_gamma_with_active_pixels(const bool flag) | DICe::Schema | inline |
| set_obstructing_subset_ids(Teuchos::RCP< std::map< int_t, std::vector< int_t > > > id_vec) | DICe::Schema | inline |
| set_optical_flow_flags(Teuchos::RCP< std::map< int_t, bool > > optical_flow_flags) | DICe::Schema | inline |
| set_params(const Teuchos::RCP< Teuchos::ParameterList > ¶ms) | DICe::Schema | |
| set_params(const std::string ¶ms_file_name) | DICe::Schema | |
| set_path_file_names(Teuchos::RCP< std::map< int_t, std::string > > path_file_names) | DICe::Schema | inline |
| set_prev_image(Teuchos::RCP< Image > img, const int_t id=0) | DICe::Schema | |
| set_ref_image(const std::string &refName) | DICe::Schema | |
| set_ref_image(const int_t img_width, const int_t img_height, const Teuchos::ArrayRCP< intensity_t > refRCP) | DICe::Schema | |
| set_ref_image(Teuchos::RCP< Image > img) | DICe::Schema | |
| set_shape_function_type(const Shape_Function_Type sft) | DICe::Schema | inline |
| set_skip_solve_flags(Teuchos::RCP< std::map< int_t, std::vector< int_t > > > skip_solve_flags) | DICe::Schema | inline |
| set_step_size(const int_t step_size_x, const int_t step_size_y) | DICe::Schema | inline |
| set_step_size(const int_t step_size) | DICe::Schema | inline |
| set_subset_dim(const int_t subset_dim) | DICe::Schema | inline |
| shape_function_type() const | DICe::Schema | inline |
| shape_function_type_ | DICe::Schema | private |
| shear_strain_enabled() const | DICe::Schema | inline |
| skip_all_solves() const | DICe::Schema | inline |
| skip_all_solves_ | DICe::Schema | private |
| skip_solve_flags() const | DICe::Schema | inline |
| skip_solve_flags_ | DICe::Schema | private |
| skip_solve_gamma_threshold() const | DICe::Schema | inline |
| skip_solve_gamma_threshold_ | DICe::Schema | private |
| sort_txt_output_ | DICe::Schema | private |
| stat_container() | DICe::Schema | inline |
| stat_container_ | DICe::Schema | private |
| step_size_x() const | DICe::Schema | inline |
| step_size_x_ | DICe::Schema | private |
| step_size_y() const | DICe::Schema | inline |
| step_size_y_ | DICe::Schema | private |
| strain_window_size(const int_t post_processor_index) const | DICe::Schema | |
| subset_dim() const | DICe::Schema | inline |
| subset_dim_ | DICe::Schema | private |
| subset_global_id(const int_t local_id) | DICe::Schema | inline |
| subset_local_id(const int_t global_id) | DICe::Schema | inline |
| theta_jump_tol() const | DICe::Schema | inline |
| theta_jump_tol_ | DICe::Schema | private |
| this_proc_gid_order() const | DICe::Schema | inline |
| this_proc_gid_order_ | DICe::Schema | private |
| threshold_block_size_ | DICe::Schema | private |
| translation_enabled() const | DICe::Schema | inline |
| update_extents(const bool use_transformation_augmentation=false) | DICe::Schema | |
| update_frame_id() | DICe::Schema | inline |
| use_incremental_formulation() const | DICe::Schema | inline |
| use_incremental_formulation_ | DICe::Schema | private |
| use_nonlinear_projection() const | DICe::Schema | inline |
| use_nonlinear_projection_ | DICe::Schema | private |
| use_objective_regularization() const | DICe::Schema | inline |
| use_search_initialization_for_failed_steps_ | DICe::Schema | private |
| use_subset_evolution() const | DICe::Schema | inline |
| use_subset_evolution_ | DICe::Schema | private |
| write_control_points_image(const std::string &fileName, const bool use_def_image=false, const bool use_one_point=false) | DICe::Schema | |
| write_deformed_subset_intensity_image(Teuchos::RCP< Objective > obj) | DICe::Schema | |
| write_deformed_subsets_image(const bool use_gamma_as_color=false) | DICe::Schema | |
| write_deformed_subsets_image_new() | DICe::Schema | |
| write_exodus_output() const | DICe::Schema | inline |
| write_exodus_output_ | DICe::Schema | private |
| write_output(const std::string &output_folder, const std::string &prefix="DICe_solution", const bool separate_files_per_subset=false, const bool separate_header_file=false, const bool no_text_output=false) | DICe::Schema | |
| write_reference_subset_intensity_image(Teuchos::RCP< Objective > obj) | DICe::Schema | |
| write_stats(const std::string &output_folder, const std::string &prefix="DICe_solution") | DICe::Schema | |
| ~Schema() (defined in DICe::Schema) | DICe::Schema | inlinevirtual |