analysis_type() const | DICe::Schema | inline |
analysis_type_ | DICe::Schema | private |
check_for_blocking_subsets(const int_t subset_global_id) | DICe::Schema | |
comm_ | DICe::Schema | private |
comm_rcp typedef | DICe::Schema | |
compute_def_gradients_ | DICe::Schema | private |
compute_laplacian_image_ | DICe::Schema | private |
compute_ref_gradients_ | DICe::Schema | private |
conformal_subset_defs() | DICe::Schema | inline |
conformal_subset_defs_ | DICe::Schema | private |
correlation_routine() const | DICe::Schema | inline |
correlation_routine_ | DICe::Schema | private |
create_mesh(Teuchos::RCP< Decomp > decomp) | DICe::Schema | private |
create_mesh_fields() | DICe::Schema | private |
def_extents() const | DICe::Schema | inline |
def_extents_ | DICe::Schema | private |
def_image_rotation_ | DICe::Schema | private |
def_img(const int_t index=0) const | DICe::Schema | inline |
def_imgs() const | DICe::Schema | inline |
def_imgs_ | DICe::Schema | private |
default_constructor_tasks(const Teuchos::RCP< Teuchos::ParameterList > ¶ms) | DICe::Schema | private |
disp_jump_tol() const | DICe::Schema | inline |
disp_jump_tol_ | DICe::Schema | private |
enable_normal_strain(const bool flag) | DICe::Schema | inline |
enable_normal_strain_ | DICe::Schema | private |
enable_rotation(const bool flag) | DICe::Schema | inline |
enable_rotation_ | DICe::Schema | private |
enable_shear_strain(const bool flag) | DICe::Schema | inline |
enable_shear_strain_ | DICe::Schema | private |
enable_translation(const bool flag) | DICe::Schema | inline |
enable_translation_ | DICe::Schema | private |
estimate_resolution_error(const Teuchos::RCP< Teuchos::ParameterList > &correlation_params, std::string &output_folder, std::string &resolution_output_folder, std::string &prefix, Teuchos::RCP< std::ostream > &outStream) | DICe::Schema | |
execute_correlation() | DICe::Schema | |
execute_cross_correlation() | DICe::Schema | |
execute_post_processors() | DICe::Schema | |
execute_triangulation(Teuchos::RCP< Triangulation > tri, Teuchos::RCP< Schema > right_schema) | DICe::Schema | |
execute_triangulation(Teuchos::RCP< Triangulation > tri) (defined in DICe::Schema) | DICe::Schema | |
exp_rcp typedef | DICe::Schema | |
fast_solver_tolerance() const | DICe::Schema | inline |
fast_solver_tolerance_ | DICe::Schema | private |
filter_failed_cine_pixels_ | DICe::Schema | private |
final_gamma_threshold_ | DICe::Schema | private |
first_frame_id() const | DICe::Schema | inline |
first_frame_id_ | DICe::Schema | private |
force_simplex_ | DICe::Schema | private |
frame_id() const | DICe::Schema | inline |
frame_id_ | DICe::Schema | private |
frame_skip_ | DICe::Schema | private |
full_ref_img_height_ | DICe::Schema | private |
full_ref_img_width_ | DICe::Schema | private |
gauss_filter_images_ | DICe::Schema | private |
gauss_filter_mask_size_ | DICe::Schema | private |
generic_correlation_routine(Teuchos::RCP< Objective > obj) | DICe::Schema | |
get_params() | DICe::Schema | inline |
global_field_value(const int_t global_id, const DICe::field_enums::Field_Spec spec) | DICe::Schema | inline |
global_num_subsets() const | DICe::Schema | inline |
global_num_subsets_ | DICe::Schema | private |
gradient_method() const | DICe::Schema | inline |
gradient_method_ | DICe::Schema | private |
has_extents() const | DICe::Schema | inline |
has_extents_ | DICe::Schema | private |
has_initial_condition_file() const | DICe::Schema | inline |
has_output_spec() const | DICe::Schema | inline |
has_output_spec_ | DICe::Schema | private |
has_post_processor_ | DICe::Schema | private |
image_deformer() const | DICe::Schema | inline |
image_deformer_ | DICe::Schema | private |
img_height() const | DICe::Schema | inline |
img_width() const | DICe::Schema | inline |
imp_rcp typedef | DICe::Schema | |
init_params_ | DICe::Schema | private |
initial_condition_file() const | DICe::Schema | inline |
initial_condition_file_ | DICe::Schema | private |
initial_gamma_threshold_ | DICe::Schema | private |
initial_guess(const int_t subset_gid, Teuchos::RCP< Local_Shape_Function > shape_function) | DICe::Schema | |
initialization_method() const | DICe::Schema | inline |
initialization_method_ | DICe::Schema | private |
initialize(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params) | DICe::Schema | private |
initialize(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Schema > schema) | DICe::Schema | private |
initialize(Teuchos::RCP< Decomp > decomp, const int_t subset_size, Teuchos::RCP< std::map< int_t, Conformal_Area_Def > > conformal_subset_defs=Teuchos::null) | DICe::Schema | private |
initialize_cross_correlation(Teuchos::RCP< Triangulation > tri, const Teuchos::RCP< Teuchos::ParameterList > &input_params) | DICe::Schema | |
interpolation_method() const | DICe::Schema | inline |
interpolation_method_ | DICe::Schema | private |
is_initialized() const | DICe::Schema | inline |
is_initialized_ | DICe::Schema | private |
levenberg_marquardt_regularization_factor() const | DICe::Schema | inline |
levenberg_marquardt_regularization_factor_ | DICe::Schema | private |
local_field_value(const int_t local_id, const DICe::field_enums::Field_Spec spec) | DICe::Schema | inline |
local_num_subsets() const | DICe::Schema | inline |
local_num_subsets_ | DICe::Schema | private |
map_rcp typedef | DICe::Schema | |
max_evolution_iterations_ | DICe::Schema | private |
max_solver_iterations_fast() const | DICe::Schema | inline |
max_solver_iterations_fast_ | DICe::Schema | private |
max_solver_iterations_robust() const | DICe::Schema | inline |
max_solver_iterations_robust_ | DICe::Schema | private |
mesh() | DICe::Schema | inline |
mesh_ | DICe::Schema | private |
mf_rcp typedef | DICe::Schema | |
motion_detected(const int_t subset_gid) | DICe::Schema | |
motion_detectors_ | DICe::Schema | private |
motion_window_params() | DICe::Schema | inline |
motion_window_params_ | DICe::Schema | private |
normal_strain_enabled() const | DICe::Schema | inline |
normalize_gamma_with_active_pixels() const | DICe::Schema | inline |
normalize_gamma_with_active_pixels_ | DICe::Schema | private |
num_frames() const | DICe::Schema | inline |
num_frames_ | DICe::Schema | private |
obj_vec() | DICe::Schema | inline |
obj_vec_ | DICe::Schema | private |
obstructing_subset_ids_ | DICe::Schema | private |
obstruction_skin_factor() const | DICe::Schema | inline |
obstruction_skin_factor_ | DICe::Schema | private |
opt_initializers_ | DICe::Schema | private |
optical_flow_flags_ | DICe::Schema | private |
optimization_method() const | DICe::Schema | inline |
optimization_method_ | DICe::Schema | private |
output_beta() const | DICe::Schema | inline |
output_beta_ | DICe::Schema | private |
output_deformed_subset_images() const | DICe::Schema | inline |
output_deformed_subset_images_ | DICe::Schema | private |
output_deformed_subset_intensity_images_ | DICe::Schema | private |
output_evolved_subset_images() const | DICe::Schema | inline |
output_evolved_subset_images_ | DICe::Schema | private |
output_spec_ | DICe::Schema | private |
override_force_simplex_ | DICe::Schema | private |
path_distance_threshold_ | DICe::Schema | private |
path_file_names_ | DICe::Schema | private |
pixel_integration_order() const | DICe::Schema | inline |
pixel_integration_order_ | DICe::Schema | private |
pixels_owning_element_global_id() | DICe::Schema | inline |
pixels_owning_element_global_id_ | DICe::Schema | private |
post_execution_tasks() | DICe::Schema | |
post_processors() | DICe::Schema | inline |
post_processors_ | DICe::Schema | private |
prepare_optimization_initializers() | DICe::Schema | |
prev_img(const int_t index=0) const | DICe::Schema | inline |
prev_imgs() const | DICe::Schema | inline |
prev_imgs_ | DICe::Schema | private |
print_fields(const std::string &fileName="") | DICe::Schema | |
project_right_image_into_left_frame(Teuchos::RCP< Triangulation > tri, const bool reference) | DICe::Schema | |
projection_method() const | DICe::Schema | inline |
projection_method_ | DICe::Schema | private |
record_failed_step(const int_t subset_gid, const int_t status, const int_t num_iterations) | DICe::Schema | |
record_step(Teuchos::RCP< Objective > obj, Teuchos::RCP< Local_Shape_Function > shape_function, const scalar_t &sigma, const scalar_t &match, const scalar_t &gamma, const scalar_t &beta, const scalar_t &noise, const scalar_t &contrast, const int_t active_pixels, const int_t status, const int_t num_iterations) | DICe::Schema | |
ref_extents() const | DICe::Schema | inline |
ref_extents_ | DICe::Schema | private |
ref_image_rotation_ | DICe::Schema | private |
ref_img() const | DICe::Schema | inline |
ref_img_ | DICe::Schema | private |
robust_delta_disp() const | DICe::Schema | inline |
robust_delta_disp_ | DICe::Schema | private |
robust_delta_theta() const | DICe::Schema | inline |
robust_delta_theta_ | DICe::Schema | private |
robust_solver_tolerance() const | DICe::Schema | inline |
robust_solver_tolerance_ | DICe::Schema | private |
rotate_def_image() | DICe::Schema | |
rotation_enabled() const | DICe::Schema | inline |
save_cross_correlation_fields() | DICe::Schema | |
save_off_fields(const int_t global_id) | DICe::Schema | inline |
Schema(const Teuchos::RCP< Teuchos::ParameterList > &correlation_params=Teuchos::null) | DICe::Schema | inline |
Schema(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params) | DICe::Schema | |
Schema(const std::string &input_file_name, const std::string ¶ms_file_name) | DICe::Schema | |
Schema(const Teuchos::RCP< Teuchos::ParameterList > &input_params, const Teuchos::RCP< Teuchos::ParameterList > &correlation_params, const Teuchos::RCP< Schema > &schema) | DICe::Schema | |
Schema(const int_t roi_width, const int_t roi_height, const int_t step_size_x, const int_t step_size_y, const int_t subset_size, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) | DICe::Schema | |
Schema(Teuchos::ArrayRCP< scalar_t > coords_x, Teuchos::ArrayRCP< scalar_t > coords_y, const int_t subset_size, Teuchos::RCP< std::map< int_t, Conformal_Area_Def > > conformal_subset_defs=Teuchos::null, Teuchos::RCP< std::vector< int_t > > neighbor_ids=Teuchos::null, const Teuchos::RCP< Teuchos::ParameterList > ¶ms=Teuchos::null) | DICe::Schema | |
set_def_image(const std::string &defName) | DICe::Schema | |
set_def_image(const int_t img_width, const int_t img_height, const Teuchos::ArrayRCP< intensity_t > defRCP, const int_t id=0) | DICe::Schema | |
set_def_image(Teuchos::RCP< Image > img, const int_t id=0) | DICe::Schema | |
set_force_simplex(Teuchos::RCP< std::set< int_t > > ids) | DICe::Schema | inline |
set_frame_range(const int_t start_id, const int_t num_frames, const int_t frame_skip) | DICe::Schema | inline |
set_motion_window_params(Teuchos::RCP< std::map< int_t, Motion_Window_Params > > motion_window_params) | DICe::Schema | inline |
set_normalize_gamma_with_active_pixels(const bool flag) | DICe::Schema | inline |
set_obstructing_subset_ids(Teuchos::RCP< std::map< int_t, std::vector< int_t > > > id_vec) | DICe::Schema | inline |
set_optical_flow_flags(Teuchos::RCP< std::map< int_t, bool > > optical_flow_flags) | DICe::Schema | inline |
set_params(const Teuchos::RCP< Teuchos::ParameterList > ¶ms) | DICe::Schema | |
set_params(const std::string ¶ms_file_name) | DICe::Schema | |
set_path_file_names(Teuchos::RCP< std::map< int_t, std::string > > path_file_names) | DICe::Schema | inline |
set_prev_image(Teuchos::RCP< Image > img, const int_t id=0) | DICe::Schema | |
set_ref_image(const std::string &refName) | DICe::Schema | |
set_ref_image(const int_t img_width, const int_t img_height, const Teuchos::ArrayRCP< intensity_t > refRCP) | DICe::Schema | |
set_ref_image(Teuchos::RCP< Image > img) | DICe::Schema | |
set_shape_function_type(const Shape_Function_Type sft) | DICe::Schema | inline |
set_skip_solve_flags(Teuchos::RCP< std::map< int_t, std::vector< int_t > > > skip_solve_flags) | DICe::Schema | inline |
set_step_size(const int_t step_size_x, const int_t step_size_y) | DICe::Schema | inline |
set_step_size(const int_t step_size) | DICe::Schema | inline |
set_subset_dim(const int_t subset_dim) | DICe::Schema | inline |
shape_function_type() const | DICe::Schema | inline |
shape_function_type_ | DICe::Schema | private |
shear_strain_enabled() const | DICe::Schema | inline |
skip_all_solves() const | DICe::Schema | inline |
skip_all_solves_ | DICe::Schema | private |
skip_solve_flags() const | DICe::Schema | inline |
skip_solve_flags_ | DICe::Schema | private |
skip_solve_gamma_threshold() const | DICe::Schema | inline |
skip_solve_gamma_threshold_ | DICe::Schema | private |
sort_txt_output_ | DICe::Schema | private |
stat_container() | DICe::Schema | inline |
stat_container_ | DICe::Schema | private |
step_size_x() const | DICe::Schema | inline |
step_size_x_ | DICe::Schema | private |
step_size_y() const | DICe::Schema | inline |
step_size_y_ | DICe::Schema | private |
strain_window_size(const int_t post_processor_index) const | DICe::Schema | |
subset_dim() const | DICe::Schema | inline |
subset_dim_ | DICe::Schema | private |
subset_global_id(const int_t local_id) | DICe::Schema | inline |
subset_local_id(const int_t global_id) | DICe::Schema | inline |
theta_jump_tol() const | DICe::Schema | inline |
theta_jump_tol_ | DICe::Schema | private |
this_proc_gid_order() const | DICe::Schema | inline |
this_proc_gid_order_ | DICe::Schema | private |
threshold_block_size_ | DICe::Schema | private |
translation_enabled() const | DICe::Schema | inline |
update_extents(const bool use_transformation_augmentation=false) | DICe::Schema | |
update_frame_id() | DICe::Schema | inline |
use_incremental_formulation() const | DICe::Schema | inline |
use_incremental_formulation_ | DICe::Schema | private |
use_nonlinear_projection() const | DICe::Schema | inline |
use_nonlinear_projection_ | DICe::Schema | private |
use_objective_regularization() const | DICe::Schema | inline |
use_search_initialization_for_failed_steps_ | DICe::Schema | private |
use_subset_evolution() const | DICe::Schema | inline |
use_subset_evolution_ | DICe::Schema | private |
write_control_points_image(const std::string &fileName, const bool use_def_image=false, const bool use_one_point=false) | DICe::Schema | |
write_deformed_subset_intensity_image(Teuchos::RCP< Objective > obj) | DICe::Schema | |
write_deformed_subsets_image(const bool use_gamma_as_color=false) | DICe::Schema | |
write_deformed_subsets_image_new() | DICe::Schema | |
write_exodus_output() const | DICe::Schema | inline |
write_exodus_output_ | DICe::Schema | private |
write_output(const std::string &output_folder, const std::string &prefix="DICe_solution", const bool separate_files_per_subset=false, const bool separate_header_file=false, const bool no_text_output=false) | DICe::Schema | |
write_reference_subset_intensity_image(Teuchos::RCP< Objective > obj) | DICe::Schema | |
write_stats(const std::string &output_folder, const std::string &prefix="DICe_solution") | DICe::Schema | |
~Schema() (defined in DICe::Schema) | DICe::Schema | inlinevirtual |